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Cambridge Advanced Imaging Centre

Cambridge Advanced Imaging Centre

Home People Electron Microscopy Publications

Technology Innovation

Technology Innovation overview High-throughput imaging for cancer research applications Super-resolution beyond the coverslip Multi-modal imaging for assessing chemical intervention in biological systems.

Light Microscopy

Light Microscopy overview

Light sheet microscopes

Light sheet microscopes overview

Light sheet microscope (Upright)

Light sheet microscope (Upright) overview General Info Specifications

Examples of Use

Examples of Use overview Single Color Time Lapse Imaging Multi-Position / Large Area Light Sheet Imaging Multi Color Time Lapse Imaging Multi Photon Time Lapse Imaging Comparison 1 and 2 Photon Light Sheet Imaging Multi Photon / Multi Color Light sheet Imaging

Zeiss Lattice Lightsheet 7 microscope

Zeiss Lattice Lightsheet 7 microscope overview Technical Specifications

Multiphoton microscope

Multiphoton microscope overview Two-photon imaging Examples of use Precise ablation

Super resolution microscopes

Super resolution microscopes overview

STED microscope (Abberior, Genetics)

STED microscope (Abberior, Genetics) overview Specifications

Examples of Use

Examples of Use overview Single Color Drosophila Active Zone Single color STED spermatocytes Multi color STED spermatocytes

Structured Illumination Microscope

Structured Illumination Microscope overview Elyra 7 Lattice SIM

Data Analysis

Data Analysis overview Bio-Image Processing Meeting 2019

Projects

Projects overview Space-varying deblurring of lightsheet microscopy images Quantitative study of cell proliferation and fate choice in zebrafish retina

Analysis of self-organising aggregates of zebrafish retinal cells

Analysis of self-organising aggregates of zebrafish retinal cells overview

Scripts

Scripts overview ComputePatterns.m MakeFigures.m imgpolarcoordMod.m shadedErrorBar.m Read3d.m

Software

Software overview Software Club Software collection Denoising with nd-safir Converting 2-photon 2D data into 3D OME stacks Making a simple movie from a 3d+t data with Vaa3d
Home People Technology Innovation Light Microscopy Data Analysis Electron Microscopy Publications
Home People Technology Innovation Light Microscopy Data Analysis Electron Microscopy Publications

Technology Innovation

Technology Innovation overview
    High-throughput imaging for cancer research applications Super-resolution beyond the coverslip Multi-modal imaging for assessing chemical intervention in biological systems.

Light Microscopy

Light Microscopy overview
    Light sheet microscopes Multiphoton microscope Super resolution microscopes

Data Analysis

Data Analysis overview
    Projects Software Bio-Image Processing Meeting 2019
  1. Home
  2. Data and Image Analysis Projects
  4. Projects
  5. Analysis of Self-organising Aggregates of Zebrafish Retinal Cells
  6. Scripts

Data Analysis

  • Data Analysis overview
  • Projects
    • Space-varying deblurring of lightsheet microscopy images
    • Quantitative study of cell proliferation and fate choice in zebrafish retina
    • Analysis of self-organising aggregates of zebrafish retinal cells
      • Scripts
        • ComputePatterns.m
        • MakeFigures.m
        • imgpolarcoordMod.m
        • shadedErrorBar.m
        • Read3d.m
  • Software
  • Bio-Image Processing Meeting 2019

Scripts

Cambridge Advanced Imaging Centre

Contact Information

Anatomy Building Downing Site CB2 3DY
Email:caic@bio.cam.ac.uk

University of Cambridge

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