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Cambridge Advanced Imaging Centre

Cambridge Advanced Imaging Centre

  • Home
  • People
  • Electron Microscopy
  • Publications

Technology Innovation

  • Technology Innovation overview
  • High-throughput imaging for cancer research applications
  • Super-resolution beyond the coverslip
  • Multi-modal imaging for assessing chemical intervention in biological systems.

Light Microscopy

  • Light Microscopy overview

Light sheet microscopes

  • Light sheet microscopes overview

Light sheet microscope (Upright)

  • Light sheet microscope (Upright) overview
  • General Info
  • Specifications

Examples of Use

  • Examples of Use overview
  • Single Color Time Lapse Imaging
  • Multi-Position / Large Area Light Sheet Imaging
  • Multi Color Time Lapse Imaging
  • Multi Photon Time Lapse Imaging
  • Comparison 1 and 2 Photon Light Sheet Imaging
  • Multi Photon / Multi Color Light sheet Imaging

Zeiss Lattice Lightsheet 7 microscope

  • Zeiss Lattice Lightsheet 7 microscope overview
  • Technical Specifications

Two-photon microscope

  • Two-photon microscope overview
  • Two-photon imaging
  • Examples of use
  • Precise ablation
  • Fluorescence-lifetime Imaging

Super resolution microscopes

  • Super resolution microscopes overview

STED microscope (Abberior, Genetics)

  • STED microscope (Abberior, Genetics) overview
  • Specifications

Examples of Use

  • Examples of Use overview
  • Single Color Drosophila Active Zone
  • Single color STED spermatocytes
  • Multi color STED spermatocytes

Structured Illumination Microscope

  • Structured Illumination Microscope overview
  • Elyra 7 Lattice SIM

Data Analysis

  • Data Analysis overview
  • Bio-Image Processing Meeting 2019

Projects

  • Projects overview
  • Space-varying deblurring of lightsheet microscopy images
  • Quantitative study of cell proliferation and fate choice in zebrafish retina

Analysis of self-organising aggregates of zebrafish retinal cells

  • Analysis of self-organising aggregates of zebrafish retinal cells overview

Scripts

  • Scripts overview
  • ComputePatterns.m
  • MakeFigures.m
  • imgpolarcoordMod.m
  • shadedErrorBar.m
  • Read3d.m

Software

  • Software overview
  • Software Club
  • Software collection
  • Denoising with nd-safir
  • Converting 2-photon 2D data into 3D OME stacks
  • Making a simple movie from a 3d+t data with Vaa3d
  • Home
  • People
  • Technology Innovation

    Technology Innovation

    Technology Innovation overview
    • High-throughput imaging for cancer research applications
    • Super-resolution beyond the coverslip
    • Multi-modal imaging for assessing chemical intervention in biological systems.
  • Light Microscopy

    Light Microscopy

    Light Microscopy overview
    • Light sheet microscopes
    • Two-photon microscope
    • Super resolution microscopes
  • Data Analysis

    Data Analysis

    Data Analysis overview
    • Projects
    • Software
    • Bio-Image Processing Meeting 2019
  • Electron Microscopy
  • Publications
    • Home
    • People
    • Technology Innovation
    • Light Microscopy
    • Data Analysis
    • Electron Microscopy
    • Publications

Data Analysis

  • Data Analysis overview
  • Projects
    • Space-varying deblurring of lightsheet microscopy images
    • Quantitative study of cell proliferation and fate choice in zebrafish retina
    • Analysis of self-organising aggregates of zebrafish retinal cells
      • Scripts
        • ComputePatterns.m
        • MakeFigures.m
        • imgpolarcoordMod.m
        • shadedErrorBar.m
        • Read3d.m
  • Software
  • Bio-Image Processing Meeting 2019

ComputePatterns.m

File
ComputePatterns.m (2.95 KB)

Cambridge Advanced Imaging Centre

Contact Information

Anatomy Building Downing Site CB2 3DY
caic@bio.cam.ac.uk

University of Cambridge

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